ants.plotting.plot_ortho_stack

plot_ortho_stack(images, overlays=None, reorient=True, xyz=None, xyz_lines=False, xyz_color='red', xyz_alpha=0.6, xyz_linewidth=2, xyz_pad=5, cmap='Greys_r', alpha=1, overlay_cmap='jet', overlay_alpha=0.9, black_bg=True, bg_thresh_quant=0.01, bg_val_quant=0.99, crop=False, scale=False, domain_image_map=None, title=None, titlefontsize=24, title_dx=0, title_dy=0, text=None, textfontsize=24, textfontcolor='white', text_dx=0, text_dy=0, filename=None, dpi=500, figsize=1.0, colpad=0, rowpad=0, transpose=False, transparent=True, orient_labels=True)[source]

Create a stack of orthographic plots with optional overlays.

Use mask_image and/or threshold_image to preprocess images to be be overlaid and display the overlays in a given range. See the wiki examples.

Example

>>> import ants
>>> mni = ants.image_read(ants.get_data('mni'))
>>> ch2 = ants.image_read(ants.get_data('ch2'))
>>> ants.plot_ortho_stack([mni,mni,mni])